Protein flexibility and conformational ensembles from kino-geometric modeling and sampling to motion planning

High-Dimensional Robotics at the Nanoscale — Kino-Geometric Modeling of Proteins and Molecular Mechanisms (2019) Budday D Thesis Bridging protein rigidity theory and normal modes using kino-geometric analysis with hierarchical constraint relaxation (2018) Budday D, Leyendecker S, van den Bedem H Conference contribution, Conference Contribution Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion (2018) Budday D, Leyendecker S, van den Bedem H Journal article, Original article Bridging protein rigidity theory and normal modes using kino-geometric analysis (2018) Budday D, Leyendecker S, van den Bedem H Conference contribution, Conference Contribution Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces (2018) Fonseca R, Budday D, van den Bedem H Journal article Frustration-guided motion planning reveals conformational transitions in proteins (2017) Budday D, Fonseca R, Leyendecker S, van den Bedem H Journal article Fast, clash-free RNA conformational morphing using molecular junctions (2017) Héliou A, Budday D, Fonseca R, van den Bedem H Journal article, Letter Frustration-guided motion planning reveals conformational transitions in proteins (2016) Budday D, Fonseca R, Leyendecker S, van den Bedem H Conference contribution, Conference Contribution Frustration-guided motion planning reveals conformational transitions in proteins (2016) Budday D, Fonseca R, Leyendecker S, van den Bedem H Conference contribution, Conference Contribution Navigating protein conformation spaces by kino-geometric sampling and modulating frustrated motions (2016) Budday D, Fonseca R, Héliou A, Leyendecker S, van den Bedem H Conference contribution, Abstract of a poster