Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65 (2025) Reim T, Hartebrodt A, Blumenthal DB, Bernett J, List M Journal article, Original article Inference of differential kinase interaction networks with KINference (2025) Meyerhöfer N, Krogan NJ, Polacco BJ, Blumenthal DB Journal article, Original article Federated unsupervised random forest for privacy-preserving patient stratification (2024) Pfeifer B, Sirocchi C, Bloice MD, Kreuzthaler M, Urschler M Journal article Online bias-aware disease module mining with ROBUST-Web (2023) Sarkar S, Lucchetta M, Maier A, Abdrabbou MMM, Baumbach J, List M, Schaefer MH, Blumenthal DB Journal article VisuStatR: Visualizing motility and morphology statistics on images in R (2022) Harmel C, Ahmed SS, Koch R, Tunnermann J, Distler T, Imle A, Giorgetti L, et al. Journal article Robust disease module mining via enumeration of diverse prize-collecting Steiner trees (2022) Bernett J, Krupke D, Sadegh S, Baumbach J, Fekete SP, Kacprowski T, List M, Blumenthal DB Journal article 3Dscript.server: true server-side 3D animation of microscopy images using a natural language-based syntax (2021) Schmid B, Tripal P, Winter Z, Palmisano R Journal article Conditional out-of-distribution generation for unpaired data using transfer VAE (2020) Lotfollahi M, Naghipourfar M, Theis FJ, Wolf FA Journal article Highly accurate classification of chest radiographic reports using a deep learning natural language model pre-trained on 3.8 million text reports (2020) Bressem KK, Adams LC, Gaudin RA, Troeltzsch D, Hamm B, Makowski MR, Schuele CY, et al. Journal article EpiGEN: An epistasis simulation pipeline (2020) Blumenthal DB, Viola L, List M, Baumbach J, Tieri P, Kacprowski T Journal article