The population context is a driver of the heterogeneous response of epithelial cells to interferons (2024) Metz-Zumaran C, Uckeley ZM, Doldan P, Muraca F, Keser Y, Lukas P, Kuropka B, et al. Journal article Probing cell identity hierarchies by fate titration and collision during direct reprogramming (2022) Hersbach BA, Fischer DS, Masserdotti G, Deeksha , Mojzisova K, Waltzhoeni T, Rodriguez-Terrones D, et al. Journal article Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation (2022) Brunner AD, Thielert M, Vasilopoulou C, Ammar C, Coscia F, Mund A, Hoerning OB, et al. Journal article Single-cell RNA sequencing of motoneurons identifies regulators of synaptic wiring in Drosophila embryos (2022) Velten J, Gao X, Van Nierop Y Sanchez P, Domsch K, Agarwal R, Bognar L, Paulsen M, et al. Journal article RNA polymerase II clusters form in line with surface condensation on regulatory chromatin (2021) Pancholi A, Klingberg TG, Zhang W, Prizak R, Mamontova I, Noa A, Sobucki M, et al. Journal article RNA velocity—current challenges and future perspectives (2021) Bergen V, Soldatov RA, Kharchenko P, Theis FJ Journal article, Review article Integrated intra- and intercellular signaling knowledge for multicellular omics analysis (2021) Tuerei D, Valdeolivas A, Gul L, Palacio-Escat N, Klein M, Ivanova O, Oelbei M, et al. Journal article Predicting antigen specificity of single T cells based on TCR CDR3 regions (2020) Fischer DS, Wu Y, Schubert B, Theis FJ Journal article Current best practices in single-cell RNA-seq analysis: a tutorial (2019) Luecken MD, Theis FJ Journal article, Review article Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues (2019) Eraslan B, Wang D, Gusic M, Prokisch H, Hallstrom BM, Uhlen M, Asplund A, et al. Journal article