Lehrstuhl für Mathematik in den Lebenswissenschaften

Cauerstraße 11
91058 Erlangen

Related Project(s)

Dormancy: To the edge of life, and back again: Unlocking the secrets of dormancy to preserve human life
Prof. Vasily Zaburdaev
(01/10/2018 - 31/03/2022)

Publications (Download BibTeX)

Kuan, H.-S., Juelicher, F., & Zaburdaev, V. (2019). Bacterial colonies as active droplets - from single cells to continuum theory. In EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (pp. S76-S76). Madrid, ES: NEW YORK: SPRINGER.
Poenisch, W., Weber, C.A., & Zaburdaev, V. (2019). How bacterial cells and colonies move on solid substrates. Physical Review E, 99(4). https://dx.doi.org/10.1103/PhysRevE.99.042419
Huang, W., & Zaburdaev, V. (2019). The shape of pinned forced polymer loops. Soft Matter, 15(8), 1785-1792. https://dx.doi.org/10.1039/c8sm02357c
Passucci, G., Brasch, M.E., Henderson, J.H., Zaburdaev, V., & Manning, M.L. (2019). Identifying the mechanism for superdiffusivity in mouse fibroblast motility. PLoS Computational Biology, 15(2). https://dx.doi.org/10.1371/journal.pcbi.1006732

Publications in addition (Download BibTeX)

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Abuhattum, S., Kim, K., Franzmann, T.M., Esslinger, A., Midtvedt, D., Schluessler, R.,... Guck, J. (2018). Intracellular Mass Density Increase Is Accompanying but Not Sufficient for Stiffening and Growth Arrest of Yeast Cells. Frontiers in Bioscience, 6. https://dx.doi.org/10.3389/fphy.2018.00131
Poenisch, W., Eckenrode, K.B., Alzurqa, K., Nasrollahi, H., Weber, C., Zaburdaev, V., & Biais, N. (2018). Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation. Scientific Reports, 8. https://dx.doi.org/10.1038/s41598-018-34754-4
Huang, W., Lin, Y.T., Froemberg, D., Shin, J., Juelicher, F., & Zaburdaev, V. (2018). Exactly solvable dynamics of forced polymer loops. New Journal of Physics, 20. https://dx.doi.org/10.1088/1367-2630/aae8f0
Krivonosov, M.I., Zaburdaev, V., Denisov, S.V., & Ivanchenko, M.V. (2018). Genetic noise mechanism for power-law switching in bacterial flagellar motors. Journal of Physics A: Mathematical and Theoretical, 51(26). https://dx.doi.org/10.1088/1751-8121/aac543
Poenisch, W., & Zaburdaev, V. (2018). Relative distance between tracers as a measure of diffusivity within moving aggregates. European Physical Journal B, 91(2). https://dx.doi.org/10.1140/epjb/e2017-80347-5
Schluessler, R., Abuhattum, S., Cojoc, G., Beck, T., Reichel, F., Kim, K.,... Guck, J. (2018). Biophysical Techniques for the Study of Phase Transitions in Protein Droplets and Cells. Biophysical Journal, 114(3), 204A-204A.
Pankratova, E.V., Kalyakulina, A.I., Krivonosov, M.I., Denisov, S.V., Taute, K.M., & Zaburdaev, V.Y. (2018). Chemotactic drift speed for bacterial motility pattern with two alternating turning events. PLoS ONE, 13(1). https://dx.doi.org/10.1371/journal.pone.0190434
Strelnikova, N., Sauter, N., Guizar-Sicairos, M., Gollner, M., Diaz, A., Delivani, P.,... Pfohl, T. (2017). Live cell X-ray imaging of autophagic vacuoles formation and chromatin dynamics in fission yeast. Scientific Reports, 7. https://dx.doi.org/10.1038/s41598-017-13175-9
Shin, J., Cherstvy, A.G., Kim, W.K., & Zaburdaev, V. (2017). Elasticity-based polymer sorting in active fluids: a Brownian dynamics study. Physical Chemistry Chemical Physics, 19(28), 18338-18347. https://dx.doi.org/10.1039/c7cp02947k
Boothe, T., Hilbert, L., Heide, M., Berninger, L., Huttner, W.B., Zaburdaev, V.,... Rink, J.C. (2017). A tunable refractive index matching medium for live imaging cells, tissues and model organisms. eLife, 6. https://dx.doi.org/10.7554/eLife.27240
Joseph, S.R., Palfy, M., Hilbert, L., Kumar, M., Karschau, J., Zaburdaev, V.,... Vastenhouw, N.L. (2017). Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos. eLife, 6. https://dx.doi.org/10.7554/eLife.23326
Fouxon, I., Denisov, S., Zaburdaev, V., & Barkai, E. (2017). Limit theorems for Levy walks in d dimensions: rare and bulk fluctuations. Journal of Physics A: Mathematical and Theoretical, 50(15). https://dx.doi.org/10.1088/1751-8121/aa5f6d
Hilbert, L., Sato, Y., Kimura, H., Honigmann, A., Zaburdaev, V., & Vastenhouw, N. (2017). Transcription Locally Disperses Chromatin and Thereby Organizes the Global Architecture of Interphase Nuclei. Biophysical Journal, 112(3), 211A-211A. https://dx.doi.org/10.1016/j.bpj.2016.11.1164
Poenisch, W., Weber, C.A., Juckeland, G., Biais, N., & Zaburdaev, V. (2017). Multiscale modeling of bacterial colonies: how pili mediate the dynamics of single cells and cellular aggregates. New Journal of Physics, 19. https://dx.doi.org/10.1088/1367-2630/aa5483
Hilbert, L., Sato, Y., Kimura, H., Julicher, F., Honigmann, A., Zaburdaev, V., & Vastenhouw, N. (2017). Interphase chromatin is adaptively folded by ongoing transcription and RNA accumulation. Molecular Biology of the Cell, 28.
Zaburdaev, V., Fouxon, I., Denisov, S., & Barkai, E. (2016). Superdiffusive Dispersals Impart the Geometry of Underlying Random Walks. Physical Review Letters, 117(27). https://dx.doi.org/10.1103/PhysRevLett.117.270601
Fitz, V., Shin, J., Ehrlich, C., Farnung, L., Cramer, P., Zaburdaev, V., & Grill, S.W. (2016). Nucleosomal arrangement affects single-molecule transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America, 113(45), 12733-12738. https://dx.doi.org/10.1073/pnas.1602764113
Iomin, A., Zaburdaev, V., & Pfohl, T. (2016). Reaction front propagation of actin polymerization in a comb-reaction system. Chaos Solitons & Fractals, 92, 115-122. https://dx.doi.org/10.1016/j.chaos.2016.09.011
Munder, M.C., Midtvedt, D., Franzmann, T., Nueske, E., Otto, O., Herbig, M.,... Alberti, S. (2016). A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. eLife, 5. https://dx.doi.org/10.7554/eLife.09347
Hilbert, L., Zaburdaev, V., & Vastenhouw, N. (2016). Subnuclear Spatial Structuring of Chromatin and Polymerase II during Transcription Activation of the Zebrafish Zygotic Genome. Biophysical Journal, 110(3), 232A-233A.

Last updated on 2019-24-04 at 10:18