Professur für Computational Biology

Adresse:
Staudtstraße 5
91058 Erlangen


Forschungsprojekt(e)


(SFB1027: Physikalische Modellierung von Nicht-Gleichgewichtsprozessen in biologischen Systemen (Universität des Saarlandes)):
SFB1027: Das kooperative Zusammenspiel von SNARE Peptiden in der Membranfusion
Prof. Dr. Rainer Böckmann
(01.01.2017 - 31.12.2020)


GRK 1962: Dynamische Wechselwirkungen an Biologischen Membranen – von Einzelmolekülen zum Gewebe
Prof. Dr. Rainer Böckmann
(01.04.2014 - 30.09.2018)


The role of SNARE TMDs during exocytosis of secretory granules
Prof. Dr. Rainer Böckmann
(01.06.2009 - 30.06.2012)



Publikationen (Download BibTeX)

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Frieß, M., Pluhackova, K., & Böckmann, R. (2018). Structural Model of the mIgM B-Cell Receptor Transmembrane Domain From Self-Association Molecular Dynamics Simulations. Frontiers in Immunology, 9. https://dx.doi.org/10.3389/fimmu.2018.02947
Kirsch, S., Kugemann, A., Carpaneto, A., Böckmann, R., & Dietrich, P. (2018). Phosphatidylinositol-3,5-bisphosphate lipid-binding-induced activation of the human two-pore channel 2. Cellular and Molecular Life Sciences, 75(20), 3803-3815. https://dx.doi.org/10.1007/s00018-018-2829-5
Kirsch, S., Kugemann, A., Carpaneto, A., Böckmann, R., & Dietrich, P. (2018). Phosphatidylinositol-3,5-bisphosphate lipid-binding-induced activation of the human two-pore channel 2. Cellular and Molecular Life Sciences. https://dx.doi.org/10.1007/s00018-018-2829-5
Ilyaskin, A., Kirsch, S., Böckmann, R., Sticht, H., Korbmacher, C., Härteis, S., & Diakov, A. (2018). The degenerin region of the human bile acid-sensitive ion channel (BASIC) is involved in channel inhibition by calcium and activation by bile acids. Pflugers Archiv : European journal of physiology. https://dx.doi.org/10.1007/s00424-018-2142-z
Gahbauer, S., Pluhackova, K., & Böckmann, R. (2018). Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol. PLoS computational biology, 14(3), e1006062. https://dx.doi.org/10.1371/journal.pcbi.1006062
Sun, L., & Böckmann, R. (2017). Membrane phase transition during heating and cooling: molecular insight into reversible melting. European biophysics journal : EBJ. https://dx.doi.org/10.1007/s00249-017-1237-3
Lautner, L., Pluhackova, K., Barth, N., Seydel, T., Lohstroh, W., Böckmann, R., & Unruh, T. (2017). Dynamic processes in biological membrane mimics revealed by quasielastic neutron scattering. Chemistry and physics of lipids. https://dx.doi.org/10.1016/j.chemphyslip.2017.05.009
Pluhackova, K., Sandoval Perez, G., & Böckmann, R. (2017). A Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface. Journal of Chemical Theory and Computation. https://dx.doi.org/10.1021/acs.jctc.7b00001
Han, J., Pluhackova, K., & Böckmann, R. (2017). The Multifaceted Role of SNARE Proteins in Membrane Fusion. Frontiers in Physiology, 8, 5. https://dx.doi.org/10.3389/fphys.2017.00005
Fillenberg, S., Frieß, M., Körner, S., Böckmann, R., & Muller, Y. (2016). Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors. PLoS ONE, 11(6), e0157691. https://dx.doi.org/10.1371/journal.pone.0157691
Gahbauer, S., & Böckmann, R. (2016). Membrane-Mediated Oligomerization of G Protein Coupled Receptors and Its Implications for GPCR Function. Frontiers in Physiology, 7, 494. https://dx.doi.org/10.3389/fphys.2016.00494
Sun, L., Bertelshofer, F., Greiner, G., & Böckmann, R. (2016). Characteristics of Sucrose Transport through the Sucrose-Specific Porin ScrY Studied by Molecular Dynamics Simulations. Frontiers in Bioengineering and Biotechnology, 4, 9. https://dx.doi.org/10.3389/fbioe.2016.00009
Pluhackova, K., Gahbauer, S., Kranz, F., Wassenaar, T., & Böckmann, R. (2016). Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4. PLoS computational biology, 12(11), e1005169. https://dx.doi.org/10.1371/journal.pcbi.1005169
Rabe, M., Aisenbrey, C., Pluhackova, K., De Wert, V., Boyle, A.L., Bruggeman, D.F.,... Bechinger, B. (2016). A Coiled-Coil Peptide Shaping Lipid Bilayers upon Fusion. Biophysical journal, 111(10), 2162-2175. https://dx.doi.org/10.1016/j.bpj.2016.10.010
Böckmann, R., & Kirsch, S. (2016). Membrane pore formation in atomistic and coarse-grained simulations. Biochimica Et Biophysica Acta-Biomembranes, 1858(10), 2266-2277. https://dx.doi.org/10.1016/j.bbamem.2015.12.031
Zhang, H., Pluhackova, K., Jiang, Z., & Böckmann, R. (2016). Binding Characteristics of Sphingosine-1-Phosphate to ApoM hints to Assisted Release Mechanism via the ApoM Calyx-Opening. Scientific Reports, 6, 30655. https://dx.doi.org/10.1038/srep30655
Larisch, N., Kirsch, S., Schambony, A., Studtrucker, T., Böckmann, R., & Dietrich, P. (2016). The function of the two-pore channel TPC1 depends on dimerization of its carboxy-terminal helix. Cellular and molecular life sciences : CMLS, 73(13), 2565-81. https://dx.doi.org/10.1007/s00018-016-2131-3
Sandoval, A., Eichler, S., Madathil, S., Reeves, P.J., Fahmy, K., & Böckmann, R. (2016). The Molecular Switching Mechanism at the Conserved D(E)RY Motif in Class-A GPCRs. Biophysical journal, 111(1), 79-89. https://dx.doi.org/10.1016/j.bpj.2016.06.004
Dhara, M., Yarzagaray, A., Makke, M., Schindeldecker, B., Schwarz, Y., Shaaban, A.,... Bruns, D. (2016). v-SNARE transmembrane domains function as catalysts for vesicle fusion. eLife, 5. https://dx.doi.org/10.7554/eLife.17571
Han, J., Pluhackova, K., & Böckmann, R. (2016). Exploring the Formation and the Structure of Synaptobrevin Oligomers in a Model Membrane. Biophysical journal, 110(9), 2004-15. https://dx.doi.org/10.1016/j.bpj.2016.04.006


Zusätzliche Publikationen (Download BibTeX)


Kirsch, S., Kugemann, A., Carpaneto, A., Böckmann, R., & Dietrich, P. (2018). Phosphatidylinositol-3,5-bisphosphate lipid-binding-induced activation of the human two-pore channel 2. Cellular and Molecular Life Sciences. https://dx.doi.org/10.1007/s00018-018-2829-5
Ilyaskin, A., Kirsch, S., Böckmann, R., Sticht, H., Korbmacher, C., Härteis, S., & Diakov, A. (2018). The degenerin region of the human bile acid-sensitive ion channel (BASIC) is involved in channel inhibition by calcium and activation by bile acids. Pflugers Archiv : European journal of physiology. https://dx.doi.org/10.1007/s00424-018-2142-z
Sun, L., & Böckmann, R. (2017). Membrane phase transition during heating and cooling: molecular insight into reversible melting. European biophysics journal : EBJ. https://dx.doi.org/10.1007/s00249-017-1237-3

Zuletzt aktualisiert 2016-05-05 um 04:58