Max-Planck-Institut für Physik komplexer Systeme (MPI PKS) / Max Planck Institute for the Physics of Complex Systems


Research facility

Location:
Dresden, Germany


Publications in cooperation with FAU scientists


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Kuan, H.-S., Juelicher, F., & Zaburdaev, V. (2019). Bacterial colonies as active droplets - from single cells to continuum theory. In EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (pp. S76-S76). Madrid, ES: NEW YORK: SPRINGER.
Poenisch, W., Weber, C.A., & Zaburdaev, V. (2019). How bacterial cells and colonies move on solid substrates. Physical Review E, 99(4). https://dx.doi.org/10.1103/PhysRevE.99.042419
Huang, W., & Zaburdaev, V. (2019). The shape of pinned forced polymer loops. Soft Matter, 15(8), 1785-1792. https://dx.doi.org/10.1039/c8sm02357c
Schluessler, R., Abuhattum, S., Cojoc, G., Beck, T., Reichel, F., Kim, K.,... Guck, J. (2018). Biophysical Techniques for the Study of Phase Transitions in Protein Droplets and Cells. Biophysical Journal, 114(3), 204A-204A.
Pankratova, E.V., Kalyakulina, A.I., Krivonosov, M.I., Denisov, S.V., Taute, K.M., & Zaburdaev, V.Y. (2018). Chemotactic drift speed for bacterial motility pattern with two alternating turning events. PLoS ONE, 13(1). https://dx.doi.org/10.1371/journal.pone.0190434
Huang, W., Lin, Y.T., Froemberg, D., Shin, J., Juelicher, F., & Zaburdaev, V. (2018). Exactly solvable dynamics of forced polymer loops. New Journal of Physics, 20. https://dx.doi.org/10.1088/1367-2630/aae8f0
Abuhattum, S., Kim, K., Franzmann, T.M., Esslinger, A., Midtvedt, D., Schluessler, R.,... Guck, J. (2018). Intracellular Mass Density Increase Is Accompanying but Not Sufficient for Stiffening and Growth Arrest of Yeast Cells. Frontiers in Bioscience, 6. https://dx.doi.org/10.3389/fphy.2018.00131
Poenisch, W., Eckenrode, K.B., Alzurqa, K., Nasrollahi, H., Weber, C., Zaburdaev, V., & Biais, N. (2018). Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation. Scientific Reports, 8. https://dx.doi.org/10.1038/s41598-018-34754-4
Poenisch, W., & Zaburdaev, V. (2018). Relative distance between tracers as a measure of diffusivity within moving aggregates. European Physical Journal B, 91(2). https://dx.doi.org/10.1140/epjb/e2017-80347-5
Ciappina, M.F., Perez-Hernandez, J.A., Landsman, A., Okell, W.A., Zherebtsov, S., Förg, B.,... Lewenstein, M. (2017). Attosecond physics at the nanoscale. Reports on Progress in Physics, 80(5). https://dx.doi.org/10.1088/1361-6633/aa574e
Boothe, T., Hilbert, L., Heide, M., Berninger, L., Huttner, W.B., Zaburdaev, V.,... Rink, J.C. (2017). A tunable refractive index matching medium for live imaging cells, tissues and model organisms. eLife, 6. https://dx.doi.org/10.7554/eLife.27240
Joseph, S.R., Palfy, M., Hilbert, L., Kumar, M., Karschau, J., Zaburdaev, V.,... Vastenhouw, N.L. (2017). Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos. eLife, 6. https://dx.doi.org/10.7554/eLife.23326
Shin, J., Cherstvy, A.G., Kim, W.K., & Zaburdaev, V. (2017). Elasticity-based polymer sorting in active fluids: a Brownian dynamics study. Physical Chemistry Chemical Physics, 19(28), 18338-18347. https://dx.doi.org/10.1039/c7cp02947k
Hilbert, L., Sato, Y., Kimura, H., Julicher, F., Honigmann, A., Zaburdaev, V., & Vastenhouw, N. (2017). Interphase chromatin is adaptively folded by ongoing transcription and RNA accumulation. Molecular Biology of the Cell, 28.
Strelnikova, N., Sauter, N., Guizar-Sicairos, M., Gollner, M., Diaz, A., Delivani, P.,... Pfohl, T. (2017). Live cell X-ray imaging of autophagic vacuoles formation and chromatin dynamics in fission yeast. Scientific Reports, 7. https://dx.doi.org/10.1038/s41598-017-13175-9
Poenisch, W., Weber, C.A., Juckeland, G., Biais, N., & Zaburdaev, V. (2017). Multiscale modeling of bacterial colonies: how pili mediate the dynamics of single cells and cellular aggregates. New Journal of Physics, 19. https://dx.doi.org/10.1088/1367-2630/aa5483
Munder, M.C., Midtvedt, D., Franzmann, T., Nueske, E., Otto, O., Herbig, M.,... Alberti, S. (2016). A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. eLife, 5. https://dx.doi.org/10.7554/eLife.09347
Fitz, V., Shin, J., Ehrlich, C., Farnung, L., Cramer, P., Zaburdaev, V., & Grill, S.W. (2016). Nucleosomal arrangement affects single-molecule transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America, 113(45), 12733-12738. https://dx.doi.org/10.1073/pnas.1602764113
Iomin, A., Zaburdaev, V., & Pfohl, T. (2016). Reaction front propagation of actin polymerization in a comb-reaction system. Chaos Solitons & Fractals, 92, 115-122. https://dx.doi.org/10.1016/j.chaos.2016.09.011
Hilbert, L., Zaburdaev, V., & Vastenhouw, N. (2016). Subnuclear Spatial Structuring of Chromatin and Polymerase II during Transcription Activation of the Zebrafish Zygotic Genome. Biophysical Journal, 110(3), 232A-233A.

Last updated on 2019-07-02 at 13:29